PUBLICATIONS (10) #

First/Co-First Author (5) #

1. Chen, C.J. and Zhang, Z. (2020) GRID: A Python Package for Field Plot Phenotyping Using Aerial Images. Remote Sensing, 12, 1697.    DOI GitHub Repo. Documentation

• Abstract

  

  Interface: Refining

  

  Interface: Detection

  

  Integrate to QGIS

  

2. Liu, L., Zhou, J., Chen, C.J., Zhang, J., Wen, W., Tian, J., Zhang, Z., and Gu, Y. (2020). GWAS-Based Identification of New Loci for Milk Yield, Fat, and Protein in Holstein Cattle. Animals 10, 2048.   DOI

3. Zhou, J., Liu, L., Chen, C.J., Zhang, M., Lu, X., Zhang, Z., Huang, X., and Shi, Y. (2019). Genome-wide association study of milk and reproductive traits in dual-purpose Xinjiang Brown cattle. BMC Genomics 20, 827.   DOI

• GWAS of Milk and Reproductive Traits in Xinjiang Brown Cattle

  

4. Chen C.J., Zhang, Z. (2018) GWAS and GS are as easy as clicking and dragging with iPat. Proceedings of the World Congress on Genetics Applied to Livestock Production, Auckland, New Zealand.   PDF

5. Chen C.J., Zhang, Z. (2018) iPat: intelligent prediction and association tool for genomic research. Bioinformatics, 34, 1925-1927.   DOI GitHub Repo. Documentation

• Abstract

  

  Demo

  

Co-Author (1) #

6. Tang, Z., Parajuli, A., Chen, C.J., Hu, Y., Revolinski, S., Medina, C.A., Lin, S., Zhang, Z., and Yu, L.X. (2021). Validation of UAV-based alfalfa biomass predictability using photogrammetry with fully automatic plot segmentation. Scientific Reports 11, 3336. DOI

Under Publication (4) #

7. Chen, C.J., Morota, G., and Cheng, H. (2021). Livestock Tracking with Unsupervised Approach.

• Demo

  

8. Chen, C.J., Garrick, D., Fernando, R., Karaman, E., and Cheng, H. (2021). XSim Version 2: Simulation of Modern Breeding Programs. GitHub Repo. Documentation

• Breeding Simulator

  

9. Chen, C.J. and Cheng, H. (2021). LMMonBoard: An Interactive Dashboard for Visualizing Mixed Models in Quantitative Genetics. GitHub Repo. Web-App

• LMM Equation

  

  Incident Matrix

  

  Input Parameters

  

10. Chen, C.J., Rutkoski, J., Schnable, J., Murray, S., Wang, L., Jin, X., Stich, B., Crossa, J., Hayes, B, and Zhang, Z. (2021). Harnessing Agronomics Through Genomics and Phenomics in Plant Breeding: A Review. Pre-Print