2.5 GWAS-assisted GS

It’s a hybrid analysis that includes GWAS reported markers as covariates (fixed effects) in the GS model, whichever tested marker that has an association signal more significant than Bonferroni cutoff (p-value < 0.05 / number of markers) will be considered as such covariates. The workflow for GWAS-assisted GS in iPat is basically the same as performing GWAS and GS alone, please follow the tutorial for details.